SNP Profiles matching EBC 5 /S-401

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 Key

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_Input profile
TTCCACGGTTGGCCGGAACTAGGGTTCC
1._RUQ_1173
TTCCCCGGTTGGCCGGAACTAGGGATCG
2._LCT_EEN_370
__AAGGTT_CC-AACC__TT_
 1516171819202122232425262728
_Input profile
GGCCCCGGCCCCCCCCCCGGAATTCCGG
1._RUQ_1173
GGCCCCGGCCCCCCCCCCGGAATTCCGG
2._LCT_EEN_370
GGCCCCGG-CC_CC_GG___CG
 2930313233343536373839404142
_Input profile
GGTTAACCTTGGGGTTGGTTCCTTCCAA
1._RUQ_1173
GGTTAACCTTGGGGTTGGTTCCTTCCAG
2._LCT_EEN_370
GGTTAA_TT___GG__TTCC-

Input profile: EBC_5_/S-401 RUQ_1138

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EBC_10_/S-401 RUQ_1173

95.2 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._LCT_EEN_370

93.2 %
22 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484